Waitlist What will be covered? This workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement ChIP-Seq Analysis SNP and indel discovery RNA-Seq differential expression analysis Experimental design Genome assembly Hardware and software considerations Cloud Computing We will present a… Read more »
Posts By: Adam
Using the Linux Command Line for Analysis of High Throughput Sequence Data, June 15-19, 2015
Register What will be covered? This workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing We will present a rich collection… Read more »
2015 Bioinformatics Training Schedule Announced
The Bioinformatics Core is pleased to announce three training opportunities which will be held at UC Davis in 2015: March 23-26: RNA-Seq and ChIP-Seq Analysis with Galaxy June 15-19: Using the Linux Command Line for Analysis of High Throughput Sequence Data September 14-18: Using Galaxy for Analysis of High Throughput Sequence Data Registration is now… Read more »
RNA-Seq and ChIP-Seq Analysis with Galaxy, March 23-26, 2015
What will be covered? … This workshop will focus on the design and analysis of two powerful experimental paradigms: RNA-Seq for expression profiling, and ChIP-Seq to assess genomic DNA binding sites. We will use Illumina data for hands-on exercises, and perform analyses using the popular Galaxy platform (http://usegalaxy.org) running on the Amazon Cloud (http://aws.amazon.com/). What… Read more »
RNA-Seq and ChIP-Seq Analysis with Galaxy, December 16-19, 2014
What will be covered? … This workshop will focus on the design and analysis of two powerful experimental paradigms: RNA-Seq for expression profiling, and ChIP-Seq to assess genomic DNA binding sites. We will use Illumina data for hands-on exercises, and perform analyses using the popular Galaxy platform (http://usegalaxy.org) running on the Amazon Cloud (http://aws.amazon.com/). What… Read more »
Next Generation Sequencing Library Preparation Workshop, October 22 – 24, 2014
The DNA Tech and Gene Expression Analysis Core is offering a three day library preparation workshop from October 22nd to 24th. You can bring your own RNA-sample, generate your first RNA-seq library, and generate your first data during the course. The course will cover the technical details and provide an introduction into the data analysis…. Read more »
Announcing the Assemblathon ‘publish for free’ contest
Thanks to the success of the Assemblathon 2 project – which was lead by Bioinformatics Core members Keith Bradnam, Joseph Fass, and director Ian Korf – the resulting paper won the 2013 BioMed Central Research Award for Open Data. As mentioned on the official Assemblathon site, the award money will be distributed by way of a… Read more »
Announcing the 2015 Bioinformatics Core Pilot Grant Program
Overview The Bioinformatics Core at the UC Davis Genome Center is pleased to announce the Pilot Grant Program (for UC Davis customers) for 2015. The Bioinformatics Core provides data analysis for a variety of experiments, including RNA-Seq, Exome Sequencing, Variant Discovery, Genome and Transcriptome Assembly, and more (here are some examples of the varied projects… Read more »
Using the Linux Command Line for Analysis of High Throughput Sequence Data, September 15-19, 2014
This new workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing The course includes a rich collection of lectures and hands-on… Read more »
Using Galaxy for Analysis of High Throughput Sequence Data, June 16-20, 2014
This workshop will cover modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing The course includes a rich collection of lectures and hands-on… Read more »